Hi Bill,
It wouldn't actually be an issue of still accelerating. It is like trying to track someone in a car that can go 100MPH in a car that can only go 95MPH. In town there is no problem. But on a long stretch of road he would pull far away from you. Eventually some time after he stops you will catch up to him and slam into him. How gradually he comes to a stop will not matter because at that time you would be still racing full speed trying to catch
up.
The first thing to check is your Max Following error. You didn't post what it is. If set to a small value then this is not the issue or there would simply be a following error fault when the axis begins to fall behind the trajectory.
G0 Rapids always come to a full stop
after each segment so I don't see how the Trajectory Planner setting could cause an unusual stop.
The best diagnostic approach for something like this is to capture motion data to a file and then plot it out to see exactly what happened.
HTH
Regards
TK